Specfem3d_globe

Introduction

SPECFEM3D Globe simulates global and regional (continental-scale) seismic wave propagation. This module conflicts with RCAC ‘openmpi’ modules - unload them before use (there is a built-in OpenMPI inside the container). For more information, please check: Home page: https://geodynamics.org/cig/software/specfem3d_globe/ Docker: https://www.amd.com/en/technologies/infinity-hub/specfem3d_globe

Versions

• 20210322–h1ee10977

Commands

• xadd_model_iso

• xadd_model_tiso

• xadd_model_tiso_cg

• xadd_model_tiso_iso

• xaddition_sem

• xclip_sem

• xcombine_AVS_DX

• xcombine_paraview_strain_data

• xcombine_sem

• xcombine_surf_data

• xcombine_vol_data

• xcombine_vol_data_vtk

• xconvolve_source_timefunction

• xcreate_cross_section

• xcreate_header_file

• xcreate_movie_AVS_DX

• xcreate_movie_GMT_global

• xdetect_duplicates_stations_file

• xdifference_sem

• xextract_database

• xinterpolate_model

• xmeshfem3D

• xsmooth_laplacian_sem

• xsmooth_sem

• xspecfem3D

• xsum_kernels

• xsum_preconditioned_kernels

• xwrite_profile

• benchmark

• mpirun

• mpiexec

• ompi_info

Module

You can load the modules by:

module load rocmcontainers
module load specfem3d_globe

Example job

Warning

Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run specfem3d_globe on our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=specfem3d_globe
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml rocmcontainers specfem3d_globe